Detailed information of SNP:
|
SNP ID:
sf0335643104(Gbrowse)
Chromosome: chr03 Position: 35643104 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1382 | 96.02% | 3.98% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 462 | 88.31% | 11.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 96.58% | 3.42% |
| Tropical Japonica | 78 | 60.26% | 39.74% |
| Japonica Intermediate | 62 | 80.65% | 19.35% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335643104 | T->C | LOC_Os03g63040(LOC_Os03g63040.1) | INTRON |