Detailed information of SNP:
|
SNP ID:
sf0335681069(Gbrowse)
Chromosome: chr03 Position: 35681069 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 72.49% | 27.51% |
| All Indica | 794 | 54.91% | 45.09% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 372 | 46.24% | 53.76% |
| Indica II | 211 | 56.40% | 43.60% |
| Indica Intermediate | 211 | 68.72% | 31.28% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335681069 | C->T | INTERGENIC | None |