Detailed information of SNP:
|
SNP ID:
sf0335700900(Gbrowse)
Chromosome: chr03 Position: 35700900 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 77.59% | 22.41% |
| All Indica | 791 | 99.62% | 0.38% |
| All Japonica | 487 | 36.96% | 63.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 99.46% | 0.54% |
| Indica II | 210 | 99.52% | 0.48% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 19.82% | 80.18% |
| Tropical Japonica | 88 | 81.82% | 18.18% |
| Japonica Intermediate | 66 | 63.64% | 36.36% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335700900 | A->T | INTERGENIC | None |