Detailed information of SNP:
|
SNP ID:
sf0335701432(Gbrowse)
Chromosome: chr03 Position: 35701432 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1350 | 71.11% | 28.89% |
| All Indica | 757 | 91.68% | 8.32% |
| All Japonica | 472 | 33.05% | 66.95% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 352 | 91.48% | 8.52% |
| Indica II | 207 | 92.27% | 7.73% |
| Indica Intermediate | 198 | 91.41% | 8.59% |
| Temperate Japonica | 315 | 13.33% | 86.67% |
| Tropical Japonica | 90 | 82.22% | 17.78% |
| Japonica Intermediate | 67 | 59.70% | 40.30% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335701432 | T->A | INTERGENIC | None |