Detailed information of SNP:
|
SNP ID:
sf0335707650(Gbrowse)
Chromosome: chr03 Position: 35707650 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 74.48% | 25.52% |
| All Indica | 792 | 95.33% | 4.67% |
| All Japonica | 492 | 35.98% | 64.02% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 370 | 94.05% | 5.95% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 332 | 18.98% | 81.02% |
| Tropical Japonica | 93 | 78.49% | 21.51% |
| Japonica Intermediate | 67 | 61.19% | 38.81% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335707650 | A->C | LOC_Os03g63200(LOC_Os03g63200.1) | Non-Synonymous SNP |