Detailed information of SNP:



SNP ID: sf0335719870(Gbrowse)

Chromosome: chr03

Position: 35719870
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1391 82.17% 17.83%
All Indica772 69.56% 30.44%
All Japonica496 99.80% 0.20%
Aus67 97.01% 2.99%
Indica I367 82.56% 17.44%
Indica II205 45.85% 54.15%
Indica Intermediate200 70.00% 30.00%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica93 98.92% 1.08%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 76.19% 23.81%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0335719870 A->G LOC_Os03g63220(LOC_Os03g63220.1) Synonymous