Detailed information of SNP:
|
SNP ID:
sf0335719870(Gbrowse)
Chromosome: chr03 Position: 35719870 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 82.17% | 17.83% |
| All Indica | 772 | 69.56% | 30.44% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 367 | 82.56% | 17.44% |
| Indica II | 205 | 45.85% | 54.15% |
| Indica Intermediate | 200 | 70.00% | 30.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335719870 | A->G | LOC_Os03g63220(LOC_Os03g63220.1) | Synonymous |