Detailed information of SNP:
|
SNP ID:
sf0335747315(Gbrowse)
Chromosome: chr03 Position: 35747315 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 72.12% | 27.88% |
| All Indica | 797 | 76.41% | 23.59% |
| All Japonica | 497 | 64.19% | 35.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 84.49% | 15.51% |
| Indica II | 213 | 57.75% | 42.25% |
| Indica Intermediate | 210 | 80.95% | 19.05% |
| Temperate Japonica | 335 | 84.78% | 15.22% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335747315 | C->G | LOC_Os03g63270(LOC_Os03g63270.1) | INTRON |