Detailed information of SNP:
|
SNP ID:
sf0335756541(Gbrowse)
Chromosome: chr03 Position: 35756541 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 62.70% | 37.30% |
| All Indica | 785 | 60.00% | 40.00% |
| All Japonica | 497 | 64.79% | 35.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 76.82% | 23.18% |
| Indica II | 213 | 28.17% | 71.83% |
| Indica Intermediate | 201 | 62.69% | 37.31% |
| Temperate Japonica | 335 | 85.07% | 14.93% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335756541 | A->G | INTERGENIC | None |