Detailed information of SNP:
|
SNP ID:
sf0335759750(Gbrowse)
Chromosome: chr03 Position: 35759750 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 51.65% | 48.35% |
| All Indica | 774 | 82.56% | 17.44% |
| All Japonica | 496 | 1.21% | 98.79% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 189 | 76.19% | 23.81% |
| Indica Intermediate | 210 | 70.48% | 29.52% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335759750 | T->C | INTERGENIC | None |