Detailed information of SNP:
|
SNP ID:
sf0335831229(Gbrowse)
Chromosome: chr03 Position: 35831229 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 51.69% | 48.31% |
| All Indica | 796 | 55.15% | 44.85% |
| All Japonica | 497 | 52.92% | 47.08% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 373 | 68.90% | 31.10% |
| Indica II | 212 | 40.09% | 59.91% |
| Indica Intermediate | 211 | 45.97% | 54.03% |
| Temperate Japonica | 335 | 69.55% | 30.45% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 26.19% | 73.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335831229 | G->T | INTERGENIC | None |