Detailed information of SNP:
|
SNP ID:
sf0335899637(Gbrowse)
Chromosome: chr03 Position: 35899637 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 96.62% | 3.38% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335899637 | G->A | LOC_Os03g63580(LOC_Os03g63580.1) | UTR_5_PRIME |