Detailed information of SNP:
|
SNP ID:
sf0335981566(Gbrowse)
Chromosome: chr03 Position: 35981566 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 78.79% | 21.21% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 497 | 49.50% | 50.50% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 32.84% | 67.16% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0335981566 | T->A | INTERGENIC | None |