Detailed information of SNP:
|
SNP ID:
sf0336023450(Gbrowse)
Chromosome: chr03 Position: 36023450 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1218 | 73.32% | 26.68% |
| All Indica | 635 | 89.61% | 10.39% |
| All Japonica | 496 | 48.99% | 51.01% |
| Aus | 35 | 97.14% | 2.86% |
| Indica I | 295 | 91.19% | 8.81% |
| Indica II | 169 | 87.57% | 12.43% |
| Indica Intermediate | 171 | 88.89% | 11.11% |
| Temperate Japonica | 334 | 32.63% | 67.37% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0336023450 | A->G | INTERGENIC | None |