Detailed information of SNP:
|
SNP ID:
sf0336030452(Gbrowse)
Chromosome: chr03 Position: 36030452 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1333 | 98.80% | 1.20% |
| All Indica | 750 | 100.00% | 0.00% |
| All Japonica | 464 | 96.55% | 3.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 354 | 100.00% | 0.00% |
| Indica II | 200 | 100.00% | 0.00% |
| Indica Intermediate | 196 | 100.00% | 0.00% |
| Temperate Japonica | 317 | 95.90% | 4.10% |
| Tropical Japonica | 87 | 97.70% | 2.30% |
| Japonica Intermediate | 60 | 98.33% | 1.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0336030452 | A->T | INTERGENIC | None |