Detailed information of SNP:



SNP ID: sf0336052242(Gbrowse)

Chromosome: chr03

Position: 36052242
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 97.04% 2.96%
All Indica799 94.74% 5.26%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I375 97.07% 2.93%
Indica II213 93.90% 6.10%
Indica Intermediate211 91.47% 8.53%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0336052242 C->T LOC_Os03g63830(LOC_Os03g63830.1) Non-Synonymous SNP