Detailed information of SNP:
|
SNP ID:
sf0336058399(Gbrowse)
Chromosome: chr03 Position: 36058399 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1284 | 59.74% | 40.26% |
| All Indica | 732 | 52.32% | 47.68% |
| All Japonica | 438 | 76.26% | 23.74% |
| Aus | 65 | 60.00% | 40.00% |
| Indica I | 347 | 61.10% | 38.90% |
| Indica II | 191 | 46.07% | 53.93% |
| Indica Intermediate | 194 | 42.78% | 57.22% |
| Temperate Japonica | 312 | 94.23% | 5.77% |
| Tropical Japonica | 73 | 23.29% | 76.71% |
| Japonica Intermediate | 53 | 43.40% | 56.60% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 35 | 28.57% | 71.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0336058399 | G->C | LOC_Os03g63840(LOC_Os03g63840.1) | INTRON |