Detailed information of SNP:
|
SNP ID:
sf0336082145(Gbrowse)
Chromosome: chr03 Position: 36082145 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 91.16% | 8.84% |
| All Indica | 783 | 89.53% | 10.47% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 373 | 95.17% | 4.83% |
| Indica II | 204 | 80.88% | 19.12% |
| Indica Intermediate | 206 | 87.86% | 12.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0336082145 | A->G | LOC_Os03g63870(LOC_Os03g63870.2) | INTRON |
| sf0336082145 | A->G | LOC_Os03g63870(LOC_Os03g63870.3) | INTRON |
| sf0336082145 | A->G | LOC_Os03g63870(LOC_Os03g63870.1) | INTRON |
| sf0336082145 | A->G | LOC_Os03g63870(LOC_Os03g63870.4) | INTRON |