Detailed information of SNP:
|
SNP ID:
sf0336152549(Gbrowse)
Chromosome: chr03 Position: 36152549 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 90.01% | 9.99% |
| All Indica | 776 | 84.66% | 15.34% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 374 | 84.49% | 15.51% |
| Indica II | 197 | 83.25% | 16.75% |
| Indica Intermediate | 205 | 86.34% | 13.66% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0336152549 | T->A | INTERGENIC | None |