Detailed information of SNP:
|
SNP ID:
sf0336243894(Gbrowse)
Chromosome: chr03 Position: 36243894 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 88.89% | 11.11% |
| All Indica | 793 | 87.26% | 12.74% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 88.20% | 11.80% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 208 | 82.69% | 17.31% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0336243894 | G->A | INTERGENIC | None |