Detailed information of SNP:
|
SNP ID:
sf0336248869(Gbrowse)
Chromosome: chr03 Position: 36248869 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 50.78% | 49.22% |
| All Indica | 796 | 17.46% | 82.54% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 72.31% | 27.69% |
| Indica I | 373 | 12.87% | 87.13% |
| Indica II | 212 | 16.98% | 83.02% |
| Indica Intermediate | 211 | 26.07% | 73.93% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0336248869 | A->G | INTERGENIC | None |