Detailed information of SNP:
|
SNP ID:
sf0336261438(Gbrowse)
Chromosome: chr03 Position: 36261438 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 54.13% | 45.87% |
| All Indica | 796 | 22.36% | 77.64% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 374 | 11.23% | 88.77% |
| Indica II | 213 | 34.27% | 65.73% |
| Indica Intermediate | 209 | 30.14% | 69.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0336261438 | T->A | LOC_Os03g64190(LOC_Os03g64190.2) | INTRON |
| sf0336261438 | T->A | LOC_Os03g64190(LOC_Os03g64190.1) | INTRON |