Detailed information of SNP:
|
SNP ID:
sf0336288381(Gbrowse)
Chromosome: chr03 Position: 36288381 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1244 | 97.27% | 2.73% |
| All Indica | 628 | 94.59% | 5.41% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 307 | 94.14% | 5.86% |
| Indica II | 161 | 94.41% | 5.59% |
| Indica Intermediate | 160 | 95.62% | 4.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0336288381 | C->T | LOC_Os03g64250(LOC_Os03g64250.2) | INTRON |
| sf0336288381 | C->T | LOC_Os03g64250(LOC_Os03g64250.4) | INTRON |
| sf0336288381 | C->T | LOC_Os03g64250(LOC_Os03g64250.5) | INTRON |
| sf0336288381 | C->T | LOC_Os03g64250(LOC_Os03g64250.3) | INTRON |
| sf0336288381 | C->T | LOC_Os03g64250(LOC_Os03g64250.6) | INTRON |