Detailed information of SNP:
|
SNP ID:
sf0336295678(Gbrowse)
Chromosome: chr03 Position: 36295678 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 54.31% | 45.69% |
| All Indica | 796 | 85.18% | 14.82% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 372 | 90.59% | 9.41% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0336295678 | T->C | INTERGENIC | None |