Detailed information of SNP:
|
SNP ID:
sf0336330087(Gbrowse)
Chromosome: chr03 Position: 36330087 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1300 | 96.31% | 3.69% |
| All Indica | 773 | 94.05% | 5.95% |
| All Japonica | 407 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 95.17% | 4.83% |
| Indica II | 203 | 95.07% | 4.93% |
| Indica Intermediate | 197 | 90.86% | 9.14% |
| Temperate Japonica | 266 | 100.00% | 0.00% |
| Tropical Japonica | 80 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0336330087 | T->A | INTERGENIC | None |