Detailed information of SNP:
|
SNP ID:
sf0336355810(Gbrowse)
Chromosome: chr03 Position: 36355810 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 51.55% | 48.45% |
| All Indica | 799 | 18.15% | 81.85% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 10.13% | 89.87% |
| Indica II | 213 | 26.29% | 73.71% |
| Indica Intermediate | 211 | 24.17% | 75.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0336355810 | C->A | INTERGENIC | None |