Detailed information of SNP:
|
SNP ID:
sf0336376510(Gbrowse)
Chromosome: chr03 Position: 36376510 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 53.60% | 46.40% |
| All Indica | 799 | 85.11% | 14.89% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0336376510 | A->G | LOC_Os03g64360(LOC_Os03g64360.3) | INTRON |
| sf0336376510 | A->G | LOC_Os03g64360(LOC_Os03g64360.2) | INTRON |
| sf0336376510 | A->G | LOC_Os03g64360(LOC_Os03g64360.1) | INTRON |