Detailed information of SNP:
|
SNP ID:
sf0336395022(Gbrowse)
Chromosome: chr03 Position: 36395022 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 54.27% | 45.73% |
| All Indica | 799 | 84.73% | 15.27% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0336395022 | T->C | INTERGENIC | None |