Detailed information of SNP:
|
SNP ID:
sf0400002186(Gbrowse)
Chromosome: chr04 Position: 2186 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 86.37% | 13.63% |
| All Indica | 799 | 93.37% | 6.63% |
| All Japonica | 497 | 73.44% | 26.56% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 89.25% | 10.75% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400002186 | T->A | LOC_Os04g01006(LOC_Os04g01006.1) | INTRON |