Detailed information of SNP:
|
SNP ID:
sf0400008811(Gbrowse)
Chromosome: chr04 Position: 8811 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 52.68% | 47.32% |
| All Indica | 798 | 81.33% | 18.67% |
| All Japonica | 496 | 14.72% | 85.28% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 87.97% | 12.03% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 59.24% | 40.76% |
| Temperate Japonica | 335 | 19.40% | 80.60% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400008811 | A->G | INTERGENIC | None |