Detailed information of SNP:
|
SNP ID:
sf0400013297(Gbrowse)
Chromosome: chr04 Position: 13297 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 72.62% | 27.38% |
| All Indica | 792 | 96.34% | 3.66% |
| All Japonica | 495 | 30.71% | 69.29% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 370 | 97.84% | 2.16% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 334 | 12.28% | 87.72% |
| Tropical Japonica | 93 | 77.42% | 22.58% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400013297 | A->G | INTERGENIC | None |