Detailed information of SNP:
|
SNP ID:
sf0400015796(Gbrowse)
Chromosome: chr04 Position: 15796 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 89.53% | 10.47% |
| All Indica | 794 | 90.81% | 9.19% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 373 | 90.35% | 9.65% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 209 | 90.43% | 9.57% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400015796 | A->T | INTERGENIC | None |