Detailed information of SNP:
|
SNP ID:
sf0400018945(Gbrowse)
Chromosome: chr04 Position: 18945 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1357 | 66.03% | 33.97% |
| All Indica | 761 | 89.09% | 10.91% |
| All Japonica | 476 | 24.16% | 75.84% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 366 | 86.89% | 13.11% |
| Indica II | 206 | 99.03% | 0.97% |
| Indica Intermediate | 189 | 82.54% | 17.46% |
| Temperate Japonica | 330 | 8.79% | 91.21% |
| Tropical Japonica | 85 | 74.12% | 25.88% |
| Japonica Intermediate | 61 | 37.70% | 62.30% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400018945 | T->C | LOC_Os04g01030(LOC_Os04g01030.1) | Non-Synonymous SNP |