Detailed information of SNP:
|
SNP ID:
sf0400023076(Gbrowse)
Chromosome: chr04 Position: 23076 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 97.59% | 2.41% |
| All Indica | 791 | 97.47% | 2.53% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 372 | 98.12% | 1.88% |
| Indica II | 208 | 95.67% | 4.33% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400023076 | T->C | LOC_Os04g01030(LOC_Os04g01030.1) | INTRON |