Detailed information of SNP:
|
SNP ID:
sf0400032101(Gbrowse)
Chromosome: chr04 Position: 32101 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1300 | 83.31% | 16.69% |
| All Indica | 786 | 91.98% | 8.02% |
| All Japonica | 396 | 63.13% | 36.87% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 368 | 94.29% | 5.71% |
| Indica II | 210 | 90.48% | 9.52% |
| Indica Intermediate | 208 | 89.42% | 10.58% |
| Temperate Japonica | 248 | 52.42% | 47.58% |
| Tropical Japonica | 91 | 84.62% | 15.38% |
| Japonica Intermediate | 57 | 75.44% | 24.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400032101 | A->G | LOC_Os04g01040(LOC_Os04g01040.1) | Synonymous |