Detailed information of SNP:
|
SNP ID:
sf0400033044(Gbrowse)
Chromosome: chr04 Position: 33044 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 95.29% | 4.71% |
| All Indica | 790 | 95.82% | 4.18% |
| All Japonica | 487 | 94.46% | 5.54% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 206 | 94.66% | 5.34% |
| Temperate Japonica | 331 | 95.77% | 4.23% |
| Tropical Japonica | 89 | 93.26% | 6.74% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400033044 | G->A | LOC_Os04g01040(LOC_Os04g01040.1) | Non-Synonymous SNP |