Detailed information of SNP:
|
SNP ID:
sf0400033660(Gbrowse)
Chromosome: chr04 Position: 33660 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1327 | 88.39% | 11.61% |
| All Indica | 715 | 92.45% | 7.55% |
| All Japonica | 492 | 84.35% | 15.65% |
| Aus | 65 | 78.46% | 21.54% |
| Indica I | 330 | 93.94% | 6.06% |
| Indica II | 194 | 93.30% | 6.70% |
| Indica Intermediate | 191 | 89.01% | 10.99% |
| Temperate Japonica | 332 | 81.93% | 18.07% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400033660 | T->C | LOC_Os04g01040(LOC_Os04g01040.1) | Non-Synonymous SNP |