Detailed information of SNP:
|
SNP ID:
sf0400042671(Gbrowse)
Chromosome: chr04 Position: 42671 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 52.14% | 47.86% |
| All Indica | 781 | 17.16% | 82.84% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 10.33% | 89.67% |
| Indica II | 213 | 8.45% | 91.55% |
| Indica Intermediate | 200 | 39.00% | 61.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400042671 | G->A | INTERGENIC | None |