Detailed information of SNP:
|
SNP ID:
sf0400051458(Gbrowse)
Chromosome: chr04 Position: 51458 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1329 | 64.26% | 35.74% |
| All Indica | 771 | 87.81% | 12.19% |
| All Japonica | 485 | 28.66% | 71.34% |
| Aus | 24 | 54.17% | 45.83% |
| Indica I | 363 | 85.40% | 14.60% |
| Indica II | 211 | 92.89% | 7.11% |
| Indica Intermediate | 197 | 86.80% | 13.20% |
| Temperate Japonica | 332 | 12.05% | 87.95% |
| Tropical Japonica | 89 | 73.03% | 26.97% |
| Japonica Intermediate | 64 | 53.12% | 46.88% |
| Group VI/Aromatic | 9 | 11.11% | 88.89% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400051458 | T->C | LOC_Os04g01060(LOC_Os04g01060.1) | Non-Synonymous SNP |