Detailed information of SNP:
|
SNP ID:
sf0400065292(Gbrowse)
Chromosome: chr04 Position: 65292 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 92.26% | 7.74% |
| All Indica | 791 | 93.93% | 6.07% |
| All Japonica | 495 | 88.08% | 11.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 92.45% | 7.55% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 207 | 91.30% | 8.70% |
| Temperate Japonica | 333 | 83.18% | 16.82% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400065292 | C->T | INTERGENIC | None |