Detailed information of SNP:
|
SNP ID:
sf0400074143(Gbrowse)
Chromosome: chr04 Position: 74143 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1350 | 62.52% | 37.48% |
| All Indica | 733 | 32.88% | 67.12% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 339 | 28.61% | 71.39% |
| Indica II | 197 | 20.81% | 79.19% |
| Indica Intermediate | 197 | 52.28% | 47.72% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400074143 | G->A | LOC_Os04g01120(LOC_Os04g01120.1) | INTRON |