Detailed information of SNP:
|
SNP ID:
sf0400078399(Gbrowse)
Chromosome: chr04 Position: 78399 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 72.28% | 27.72% |
| All Indica | 798 | 94.24% | 5.76% |
| All Japonica | 493 | 32.45% | 67.55% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 95.19% | 4.81% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 333 | 12.01% | 87.99% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 66 | 60.61% | 39.39% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400078399 | T->C | INTERGENIC | None |