Detailed information of SNP:
|
SNP ID:
sf0400078773(Gbrowse)
Chromosome: chr04 Position: 78773 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 61.70% | 38.30% |
| All Indica | 773 | 33.25% | 66.75% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 30.75% | 69.25% |
| Indica II | 206 | 20.39% | 79.61% |
| Indica Intermediate | 206 | 50.49% | 49.51% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400078773 | C->T | INTERGENIC | None |