Detailed information of SNP:
|
SNP ID:
sf0400102190(Gbrowse)
Chromosome: chr04 Position: 102190 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 55.74% | 44.26% |
| All Indica | 799 | 83.98% | 16.02% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400102190 | G->A | INTERGENIC | None |