Detailed information of SNP:
|
SNP ID:
sf0400112914(Gbrowse)
Chromosome: chr04 Position: 112914 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 55.47% | 44.53% |
| All Indica | 790 | 23.16% | 76.84% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 16.71% | 83.29% |
| Indica II | 210 | 13.33% | 86.67% |
| Indica Intermediate | 209 | 44.50% | 55.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400112914 | C->T | INTERGENIC | None |