Detailed information of SNP:
|
SNP ID:
sf0400113187(Gbrowse)
Chromosome: chr04 Position: 113187 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 85.24% | 14.76% |
| All Indica | 789 | 90.49% | 9.51% |
| All Japonica | 497 | 75.05% | 24.95% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 91.87% | 8.13% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 207 | 84.06% | 15.94% |
| Temperate Japonica | 335 | 89.85% | 10.15% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400113187 | G->A | INTERGENIC | None |