Detailed information of SNP:
|
SNP ID:
sf0400131403(Gbrowse)
Chromosome: chr04 Position: 131403 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 72.58% | 27.42% |
| All Indica | 795 | 94.84% | 5.16% |
| All Japonica | 497 | 33.40% | 66.60% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 94.64% | 5.36% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 13.43% | 86.57% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400131403 | A->G | INTERGENIC | None |