Detailed information of SNP:
|
SNP ID:
sf0400131474(Gbrowse)
Chromosome: chr04 Position: 131474 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 72.39% | 27.61% |
| All Indica | 796 | 94.47% | 5.53% |
| All Japonica | 497 | 33.00% | 67.00% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 372 | 94.62% | 5.38% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 13.13% | 86.87% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400131474 | T->C | INTERGENIC | None |