Detailed information of SNP:
|
SNP ID:
sf0400133690(Gbrowse)
Chromosome: chr04 Position: 133690 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 73.89% | 26.11% |
| All Indica | 798 | 95.86% | 4.14% |
| All Japonica | 497 | 34.41% | 65.59% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 14.33% | 85.67% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400133690 | A->G | INTERGENIC | None |