Detailed information of SNP:
|
SNP ID:
sf0400136046(Gbrowse)
Chromosome: chr04 Position: 136046 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 75.26% | 24.74% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 497 | 33.80% | 66.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 13.73% | 86.27% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400136046 | T->G | INTERGENIC | None |