Detailed information of SNP:
|
SNP ID:
sf0400145964(Gbrowse)
Chromosome: chr04 Position: 145964 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 74.43% | 25.57% |
| All Indica | 798 | 97.87% | 2.13% |
| All Japonica | 497 | 34.00% | 66.00% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 13.73% | 86.27% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400145964 | A->G | INTERGENIC | None |